J3_8OI5_063

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8OI5|1|B|A|1202, 8OI5|1|B|G|1431, 8OI5|1|B|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_063 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.0632

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8OI5|1|B|C|1200
8OI5|1|B|C|1201
8OI5|1|B|A|1202
8OI5|1|B|G|1203
8OI5|1|B|A|1204
8OI5|1|B|C|1205
*
8OI5|1|B|G|1248
8OI5|1|B|G|1249
8OI5|1|B|G|1250
8OI5|1|B|U|1251
8OI5|1|B|G|1252
*
8OI5|1|B|U|1428
8OI5|1|B|U|1429
8OI5|1|B|A|1430
8OI5|1|B|G|1431
8OI5|1|B|A|1432
8OI5|1|B|C|1433
8OI5|1|B|G|1434

Current chains

Chain B

18S

Nearby chains

Chain M

40S ribosomal protein S10-A

Chain f

40S ribosomal protein S29A

Chain h

Ubiquitin-40S ribosomal protein S31 fusion protein