J3_8OI5_070

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8OI5|1|CM|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_070 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.0422

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

8OI5|1|CM|A|41
8OI5|1|CM|G|42
8OI5|1|CM|A|43
8OI5|1|CM|U|44
8OI5|1|CM|U|45
8OI5|1|CM|A|46
8OI5|1|CM|A|47
8OI5|1|CM|G|48
*
8OI5|1|CM|C|429
8OI5|1|CM|G|430
8OI5|1|CM|C|431
8OI5|1|CM|G|432
8OI5|1|CM|C|433
8OI5|1|CM|A|434
8OI5|1|CM|A|435
8OI5|1|CM|A|436
8OI5|1|CM|U|437
*
8OI5|1|CM|A|462
8OI5|1|CM|G|463
8OI5|1|CM|U|464

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)