J3_8OI5_071
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAGAUAAAAAAUCAAUG*CUCUUUG*CAUA
- Length
- 28 nucleotides
- Bulged bases
- 8OI5|1|CM|A|215, 8OI5|1|CM|A|216, 8OI5|1|CM|U|221, 8OI5|1|CM|U|238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_071 not in the Motif Atlas
- Homologous match to J3_8C3A_084
- Geometric discrepancy: 0.0941
- The information below is about J3_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67192.1
- Basepair signature
- cWW-F-F-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OI5|1|CM|U|210
8OI5|1|CM|A|211
8OI5|1|CM|G|212
8OI5|1|CM|A|213
8OI5|1|CM|U|214
8OI5|1|CM|A|215
8OI5|1|CM|A|216
8OI5|1|CM|A|217
8OI5|1|CM|A|218
8OI5|1|CM|A|219
8OI5|1|CM|A|220
8OI5|1|CM|U|221
8OI5|1|CM|C|222
8OI5|1|CM|A|223
8OI5|1|CM|A|224
8OI5|1|CM|U|225
8OI5|1|CM|G|226
*
8OI5|1|CM|C|235
8OI5|1|CM|U|236
8OI5|1|CM|C|237
8OI5|1|CM|U|238
8OI5|1|CM|U|239
8OI5|1|CM|U|240
8OI5|1|CM|G|241
*
8OI5|1|CM|C|248
8OI5|1|CM|A|249
8OI5|1|CM|U|250
8OI5|1|CM|A|251
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CT
- 40S ribosomal protein S6
- Chain CV
- 40S ribosomal protein S8
- Chain CY
- 40S ribosomal protein S11A
Coloring options: