J3_8OVE_003
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_003 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.091
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|AA|U|1573
8OVE|1|AA|G|1574
8OVE|1|AA|G|1575
8OVE|1|AA|A|1576
*
8OVE|1|AA|U|1935
8OVE|1|AA|A|1936
8OVE|1|AA|C|1937
*
8OVE|1|AA|G|2069
8OVE|1|AA|7MG|2070
8OVE|1|AA|A|2071
8OVE|1|AA|A|2072
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A
- HIS-THR-CYS-THR
- Chain A2
- 40S ribosomal protein S5, putative
- Chain AK
- 40S ribosomal protein S16, putative
- Chain AO
- Ribosomal protein S19, putative
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