J3_8OVE_005

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCGGAC*GAAUG*CUCAAUG

Length

18 nucleotides

Bulged bases

8OVE|1|AA|G|1622, 8OVE|1|AA|A|1912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OVE_005 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.2128

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8OVE|1|AA|C|1620
8OVE|1|AA|C|1621
8OVE|1|AA|G|1622
8OVE|1|AA|G|1623
8OVE|1|AA|A|1624
8OVE|1|AA|C|1625
*
8OVE|1|AA|G|1668
8OVE|1|AA|A|1669
8OVE|1|AA|A|1670
8OVE|1|AA|U|1671
8OVE|1|AA|G|1672
*
8OVE|1|AA|C|1909
8OVE|1|AA|U|1910
8OVE|1|AA|C|1911
8OVE|1|AA|A|1912
8OVE|1|AA|A|1913
8OVE|1|AA|U|1914
8OVE|1|AA|G|1915

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A8

Putative ribosomal protein S29

Chain AD

40S ribosomal protein S10, putative