J3_8OVE_008
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAUG*CCCACUUG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8OVE|1|AA|U|1940
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_008 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.2893
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8OVE|1|AA|C|1937
8OVE|1|AA|A|1938
8OVE|1|AA|A|1939
8OVE|1|AA|U|1940
8OVE|1|AA|G|1941
*
8OVE|1|AA|C|2027
8OVE|1|AA|C|2028
8OVE|1|AA|C|2029
8OVE|1|AA|A|2030
8OVE|1|AA|C|2031
8OVE|1|AA|U|2032
8OVE|1|AA|U|2033
8OVE|1|AA|G|2034
*
8OVE|1|AA|C|2066
8OVE|1|AA|G|2067
8OVE|1|AA|A|2068
8OVE|1|AA|G|2069
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A2
- 40S ribosomal protein S5, putative
- Chain AM
- 40S ribosomal protein S18, putative
- Chain AO
- Ribosomal protein S19, putative
- Chain AU
- 40S ribosomal protein S25
Coloring options: