J3_8OVE_010
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAACUA*UCG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|BA|A|937, 8OVE|1|BA|G|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_010 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1767
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BA|U|934
8OVE|1|BA|G|935
8OVE|1|BA|A|936
8OVE|1|BA|A|937
8OVE|1|BA|C|938
8OVE|1|BA|U|939
8OVE|1|BA|A|940
*
8OVE|1|BA|U|1025
8OVE|1|BA|C|1026
8OVE|1|BA|G|1027
*
8OVE|1|BA|C|1043
8OVE|1|BA|G|1044
8OVE|1|BA|A|1045
8OVE|1|BA|A|1046
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- Ribosomal protein L15
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bn
- Ribosomal protein L37
- Chain Bq
- 60S ribosomal protein L39, putative
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