J3_8OVE_014
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAG*UCAUCAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|BB|U|23, 8OVE|1|BB|C|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_014 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1255
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OVE|1|BA|G|1676
8OVE|1|BA|A|1677
8OVE|1|BA|A|1678
8OVE|1|BA|G|1679
*
8OVE|1|BB|U|20
8OVE|1|BB|C|21
8OVE|1|BB|A|22
8OVE|1|BB|U|23
8OVE|1|BB|C|24
8OVE|1|BB|A|25
8OVE|1|BB|C|26
*
8OVE|1|BB|G|35
8OVE|1|BB|U|36
8OVE|1|BB|C|37
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Bj
- 60S ribosomal protein L34, putative
- Chain Bn
- Ribosomal protein L37
- Chain Bq
- 60S ribosomal protein L39, putative
Coloring options: