J3_8OVE_017
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UAAC*GUU*ACUG(A2M)CA
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|BB|A|1341, 8OVE|1|BB|A|1342, 8OVE|1|BB|G|1387
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_017 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.114
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|BB|U|1340
8OVE|1|BB|A|1341
8OVE|1|BB|A|1342
8OVE|1|BB|C|1343
*
8OVE|1|BB|G|1368
8OVE|1|BB|U|1369
8OVE|1|BB|U|1370
*
8OVE|1|BB|A|1384
8OVE|1|BB|C|1385
8OVE|1|BB|U|1386
8OVE|1|BB|G|1387
8OVE|1|BB|A2M|1388
8OVE|1|BB|C|1389
8OVE|1|BB|A|1390
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 60S ribosomal protein L13a, putative
- Chain BW
- 60S ribosomal protein L23, putative
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
Coloring options: