J3_8OVE_021

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGACUUAG*CGCGCAAAU*AGC

Length

20 nucleotides

Bulged bases

8OVE|1|AA|A|75

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OVE_021 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1245

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

8OVE|1|AA|G|69
8OVE|1|AA|G|70
8OVE|1|AA|A|71
8OVE|1|AA|C|72
8OVE|1|AA|U|73
8OVE|1|AA|U|74
8OVE|1|AA|A|75
8OVE|1|AA|G|76
*
8OVE|1|AA|C|524
8OVE|1|AA|G|525
8OVE|1|AA|C|526
8OVE|1|AA|G|527
8OVE|1|AA|C|528
8OVE|1|AA|A|529
8OVE|1|AA|A|530
8OVE|1|AA|A|531
8OVE|1|AA|U|532
*
8OVE|1|AA|A|562
8OVE|1|AA|G|563
8OVE|1|AA|C|564

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A6

Probable 40S ribosomal protein S9

Chain AS

40S ribosomal protein S23, putative