J3_8OVE_024
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAAUU(PSU)*GGGGAACUUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 8OVE|1|AA|G|1604, 8OVE|1|AA|G|1606, 8OVE|1|AA|A|1608
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_024 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.132
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|AA|U|1585
8OVE|1|AA|U|1586
8OVE|1|AA|U|1587
8OVE|1|AA|A|1588
8OVE|1|AA|A|1589
8OVE|1|AA|U|1590
8OVE|1|AA|U|1591
8OVE|1|AA|PSU|1592
*
8OVE|1|AA|G|1603
8OVE|1|AA|G|1604
8OVE|1|AA|G|1605
8OVE|1|AA|G|1606
8OVE|1|AA|A|1607
8OVE|1|AA|A|1608
8OVE|1|AA|C|1609
8OVE|1|AA|U|1610
8OVE|1|AA|U|1611
8OVE|1|AA|U|1612
8OVE|1|AA|A|1613
8OVE|1|AA|C|1614
*
8OVE|1|AA|G|1921
8OVE|1|AA|G|1922
8OVE|1|AA|C|1923
8OVE|1|AA|G|1924
8OVE|1|AA|A|1925
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A
- HIS-THR-CYS-THR
- Chain A8
- Putative ribosomal protein S29
- Chain AI
- 40S ribosomal protein S15, putative
- Chain AM
- 40S ribosomal protein S18, putative
- Chain AQ
- Ribosomal protein S10
Coloring options: