J3_8P4V_003
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8P4V|1|1|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_003 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.0637
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75408.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|1|C|185
8P4V|1|1|U|186
8P4V|1|1|A|187
8P4V|1|1|U|188
8P4V|1|1|G|189
*
8P4V|1|1|C|205
8P4V|1|1|G|206
8P4V|1|1|U|207
8P4V|1|1|C|208
8P4V|1|1|A|209
8P4V|1|1|U|210
8P4V|1|1|A|211
8P4V|1|1|G|212
8P4V|1|1|A|213
8P4V|1|1|G|214
*
8P4V|1|1|C|226
8P4V|1|1|G|227
8P4V|1|1|U|228
8P4V|1|1|G|229
8P4V|1|1|U|230
8P4V|1|1|G|231
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L4-A
Coloring options: