J3_8P4V_040
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8P4V|1|A|U|1473, 8P4V|1|A|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_040 not in the Motif Atlas
- Homologous match to J3_8P9A_084
- Geometric discrepancy: 0.1871
- The information below is about J3_8P9A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8P4V|1|A|C|1470
8P4V|1|A|A|1471
8P4V|1|A|C|1472
8P4V|1|A|U|1473
8P4V|1|A|G|1474
*
8P4V|1|A|C|1533
8P4V|1|A|G|1534
8P4V|1|A|U|1535
8P4V|1|A|G|1536
8P4V|1|A|C|1537
8P4V|1|A|U|1538
8P4V|1|A|G|1539
8P4V|1|A|G|1540
*
8P4V|1|A|C|1571
8P4V|1|A|G|1572
8P4V|1|A|A|1573
8P4V|1|A|G|1574
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S5
- Chain T
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S19-A
- Chain a
- 40S ribosomal protein S25-A
Coloring options: