J3_8P4V_052

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8P4V|1|AR|A|1482, 8P4V|1|AR|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P4V_052 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.0616

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8P4V|1|AR|U|1479
8P4V|1|AR|G|1480
8P4V|1|AR|A|1481
8P4V|1|AR|A|1482
8P4V|1|AR|G|1483
8P4V|1|AR|U|1484
8P4V|1|AR|G|1485
*
8P4V|1|AR|C|1857
8P4V|1|AR|A|1858
8P4V|1|AR|A|1859
*
8P4V|1|AR|U|1871
8P4V|1|AR|C|1872
8P4V|1|AR|U|1873
8P4V|1|AR|A|1874

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DI

60S ribosomal protein L34-A