J3_8PKL_005

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8PKL|1|7|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PKL_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1134

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8PKL|1|7|C|1306
8PKL|1|7|A|1307
8PKL|1|7|A|1308
8PKL|1|7|G|1309
*
8PKL|1|7|C|1605
8PKL|1|7|C|1606
8PKL|1|7|C|1607
8PKL|1|7|A|1608
8PKL|1|7|A|1609
8PKL|1|7|A|1610
8PKL|1|7|C|1611
*
8PKL|1|7|G|1620
8PKL|1|7|U|1621
8PKL|1|7|G|1622

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L34