J3_8PV4_003
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAACUA*UGG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8PV4|1|C1|A|799, 8PV4|1|C1|G|906
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV4_003 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.2141
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PV4|1|C1|U|796
8PV4|1|C1|G|797
8PV4|1|C1|A|798
8PV4|1|C1|A|799
8PV4|1|C1|C|800
8PV4|1|C1|U|801
8PV4|1|C1|A|802
*
8PV4|1|C1|U|887
8PV4|1|C1|G|888
8PV4|1|C1|G|889
*
8PV4|1|C1|C|905
8PV4|1|C1|G|906
8PV4|1|C1|A|907
8PV4|1|C1|A|908
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L37
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