J3_8PV4_011
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8PV4|1|C1|A|2846, 8PV4|1|C1|U|2847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV4_011 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0652
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PV4|1|C1|U|2845
8PV4|1|C1|A|2846
8PV4|1|C1|U|2847
8PV4|1|C1|C|2848
*
8PV4|1|C1|G|2873
8PV4|1|C1|U|2874
8PV4|1|C1|U|2875
*
8PV4|1|C1|A|2889
8PV4|1|C1|C|2890
8PV4|1|C1|U|2891
8PV4|1|C1|A|2892
8PV4|1|C1|A|2893
8PV4|1|C1|U|2894
8PV4|1|C1|A|2895
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain CO
- DUF2423 domain-containing protein
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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