J3_8PV4_018
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UU*AGAAG*CAUUCGA
- Length
- 14 nucleotides
- Bulged bases
- 8PV4|1|C1|A|1048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV4_018 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4288
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8PV4|1|C1|U|968
8PV4|1|C1|U|969
*
8PV4|1|C1|A|1045
8PV4|1|C1|G|1046
8PV4|1|C1|A|1047
8PV4|1|C1|A|1048
8PV4|1|C1|G|1049
*
8PV4|1|C1|C|1075
8PV4|1|C1|A|1076
8PV4|1|C1|U|1077
8PV4|1|C1|U|1078
8PV4|1|C1|C|1079
8PV4|1|C1|G|1080
8PV4|1|C1|A|1081
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
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