J3_8QCQ_012

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8QCQ|1|a|U|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_012 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1168

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8QCQ|1|a|C|835
8QCQ|1|a|U|836
8QCQ|1|a|A|837
8QCQ|1|a|A|838
*
8QCQ|1|a|U|867
8QCQ|1|a|G|868
8QCQ|1|a|C|869
8QCQ|1|a|A|870
8QCQ|1|a|G|871
*
8QCQ|1|a|C|878
8QCQ|1|a|A|879
8QCQ|1|a|U|880
8QCQ|1|a|U|881
8QCQ|1|a|A|882
8QCQ|1|a|A|883
8QCQ|1|a|G|884

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8