J3_8QCQ_021
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 8QCQ|1|A|G|550, 8QCQ|1|A|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QCQ_021 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.136
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8QCQ|1|A|G|30
8QCQ|1|A|C|31
*
8QCQ|1|A|G|521
8QCQ|1|A|U|522
8QCQ|1|A|G|523
8QCQ|1|A|A|524
8QCQ|1|A|A|525
8QCQ|1|A|A|526
8QCQ|1|A|A|527
8QCQ|1|A|G|528
8QCQ|1|A|C|529
8QCQ|1|A|A|530
8QCQ|1|A|C|531
*
8QCQ|1|A|G|542
8QCQ|1|A|A|543
8QCQ|1|A|G|544
8QCQ|1|A|U|545
8QCQ|1|A|G|546
8QCQ|1|A|A|547
8QCQ|1|A|A|548
8QCQ|1|A|A|549
8QCQ|1|A|G|550
8QCQ|1|A|A|551
8QCQ|1|A|G|552
8QCQ|1|A|A|553
8QCQ|1|A|U|554
8QCQ|1|A|C|555
8QCQ|1|A|C|556
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: