J3_8QCQ_023

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8QCQ|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_023 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.2787

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8QCQ|1|A|C|272
8QCQ|1|A|A|273
8QCQ|1|A|A|274
8QCQ|1|A|A|275
8QCQ|1|A|C|276
*
8QCQ|1|A|G|295
8QCQ|1|A|G|296
8QCQ|1|A|G|297
8QCQ|1|A|U|298
8QCQ|1|A|U|299
8QCQ|1|A|G|300
8QCQ|1|A|U|301
8QCQ|1|A|A|302
*
8QCQ|1|A|U|416
8QCQ|1|A|G|417

Current chains

Chain A

23S rRNA

Nearby chains