J3_8QYX_011

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8QYX|1|A2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QYX_011 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1577

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8QYX|1|A2|C|2393
8QYX|1|A2|G|2394
8QYX|1|A2|A|2395
8QYX|1|A2|A|2396
8QYX|1|A2|G|2397
8QYX|1|A2|U|2398
8QYX|1|A2|G|2399
*
8QYX|1|A2|C|2805
8QYX|1|A2|A|2806
8QYX|1|A2|A|2807
*
8QYX|1|A2|U|2819
8QYX|1|A2|C|2820
8QYX|1|A2|U|2821
8QYX|1|A2|G|2822

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L1

60S ribosomal protein L19

Chain a1

60S ribosomal protein L34