J3_8QYX_012

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

8QYX|1|A2|U|2788, 8QYX|1|A2|A|2789, 8QYX|1|A2|U|2790

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QYX_012 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.0922

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8QYX|1|A2|G|2402
8QYX|1|A2|A|2403
8QYX|1|A2|A|2404
8QYX|1|A2|G|2405
*
8QYX|1|A2|C|2785
8QYX|1|A2|C|2786
8QYX|1|A2|A2M|2787
8QYX|1|A2|U|2788
8QYX|1|A2|A|2789
8QYX|1|A2|U|2790
8QYX|1|A2|C|2791
*
8QYX|1|A2|G|2800
8QYX|1|A2|U|2801
8QYX|1|A2|C|2802

Current chains

Chain A2

28S rRNA

Nearby chains

Chain a1

60S ribosomal protein L34

Chain d1

60S ribosomal protein L37

Chain f1

60S ribosomal protein L39