J3_8QYX_016

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QYX_016 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2598

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8QYX|1|A2|U|2575
8QYX|1|A2|G|2576
*
8QYX|1|A2|C|2585
8QYX|1|A2|G|2586
8QYX|1|A2|A|2587
8QYX|1|A2|C|2588
8QYX|1|A2|C|2589
*
8QYX|1|A2|G|2756
8QYX|1|A2|A|2757

Current chains

Chain A2

28S rRNA

Nearby chains

Chain T1

60S ribosomal protein L27

Chain a1

60S ribosomal protein L34