J3_8R3V_029

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8R3V|1|A2|U|1240, 8R3V|1|A2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R3V_029 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1854

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8R3V|1|A2|C|1237
8R3V|1|A2|A|1238
8R3V|1|A2|A|1239
8R3V|1|A2|U|1240
8R3V|1|A2|G|1241
*
8R3V|1|A2|C|1296
8R3V|1|A2|G|1297
8R3V|1|A2|U|1298
8R3V|1|A2|A|1299
8R3V|1|A2|G|1300
8R3V|1|A2|U|1301
8R3V|1|A2|C|1302
8R3V|1|A2|C|1303
*
8R3V|1|A2|G|1334
8R3V|1|A2|U|1335
8R3V|1|A2|C|1336
8R3V|1|A2|G|1337

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain G2

30S ribosomal protein S7

Chain M2

Small ribosomal subunit protein uS13