J3_8R55_025

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

8R55|1|A|U|1221, 8R55|1|A|U|1223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R55_025 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.4093

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8R55|1|A|C|1000
8R55|1|A|U|1001
8R55|1|A|U|1002
8R55|1|A|G|1003
8R55|1|A|A|1004
8R55|1|A|C|1005
8R55|1|A|A|1006
8R55|1|A|U|1007
*
8R55|1|A|A|1054
8R55|1|A|C|1055
8R55|1|A|A|1056
8R55|1|A|G|1057
*
8R55|1|A|C|1219
8R55|1|A|U|1220
8R55|1|A|U|1221
8R55|1|A|A|1222
8R55|1|A|U|1223
8R55|1|A|G|1224

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain N

30S ribosomal protein S14 type Z