J3_8R55_030

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC

Length

28 nucleotides

Bulged bases

8R55|1|X|G|550, 8R55|1|X|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R55_030 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2256

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8R55|1|X|G|30
8R55|1|X|C|31
*
8R55|1|X|G|521
8R55|1|X|U|522
8R55|1|X|G|523
8R55|1|X|A|524
8R55|1|X|A|525
8R55|1|X|A|526
8R55|1|X|A|527
8R55|1|X|G|528
8R55|1|X|C|529
8R55|1|X|A|530
8R55|1|X|C|531
*
8R55|1|X|G|542
8R55|1|X|A|543
8R55|1|X|G|544
8R55|1|X|U|545
8R55|1|X|G|546
8R55|1|X|A|547
8R55|1|X|A|548
8R55|1|X|A|549
8R55|1|X|G|550
8R55|1|X|A|551
8R55|1|X|G|552
8R55|1|X|A|553
8R55|1|X|U|554
8R55|1|X|C|555
8R55|1|X|C|556

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain n

Large ribosomal subunit protein bL20

Chain r

Large ribosomal subunit protein uL22

Chain t

Large ribosomal subunit protein uL24