J3_8RDV_004

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_004 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0751

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RDV|1|Z2|C|1282
8RDV|1|Z2|G|1283
8RDV|1|Z2|G|1284
8RDV|1|Z2|A|1285
8RDV|1|Z2|A|1286
8RDV|1|Z2|G|1287
*
8RDV|1|Z2|C|1613
8RDV|1|Z2|A|1614
8RDV|1|Z2|G|1615
*
8RDV|1|Z2|C|1627
8RDV|1|Z2|A|1628
8RDV|1|Z2|A|1629
8RDV|1|Z2|G|1630

Current chains

Chain Z2

23S rRNA

Nearby chains