J3_8RDV_005

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CCUAAAC*GUG

Length

14 nucleotides

Bulged bases

8RDV|1|Z2|U|1595, 8RDV|1|Z2|A|1597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2074

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RDV|1|Z2|C|1290
8RDV|1|Z2|A|1291
8RDV|1|Z2|A|1292
8RDV|1|Z2|G|1293
*
8RDV|1|Z2|C|1593
8RDV|1|Z2|C|1594
8RDV|1|Z2|U|1595
8RDV|1|Z2|A|1596
8RDV|1|Z2|A|1597
8RDV|1|Z2|A|1598
8RDV|1|Z2|C|1599
*
8RDV|1|Z2|G|1608
8RDV|1|Z2|U|1609
8RDV|1|Z2|G|1610

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34