J3_8RDV_010
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAG*CGCAG*CAAUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8RDV|1|iN|U|915, 8RDV|1|iN|A|917
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_010 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1313
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8RDV|1|iN|C|870
8RDV|1|iN|U|871
8RDV|1|iN|A|872
8RDV|1|iN|G|873
*
8RDV|1|iN|C|901
8RDV|1|iN|G|902
8RDV|1|iN|C|903
8RDV|1|iN|A|904
8RDV|1|iN|G|905
*
8RDV|1|iN|C|912
8RDV|1|iN|A|913
8RDV|1|iN|A|914
8RDV|1|iN|U|915
8RDV|1|iN|A|916
8RDV|1|iN|A|917
8RDV|1|iN|G|918
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain A4
- Small ribosomal subunit protein uS2
- Chain BQ
- Small ribosomal subunit protein uS8
- Chain E5
- Small ribosomal subunit protein uS5
- Chain NV
- Small ribosomal subunit protein bS21
Coloring options: