J3_8RDV_012

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_012 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0689

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8RDV|1|iN|U|987
8RDV|1|iN|G|988
8RDV|1|iN|G|989
8RDV|1|iN|A|990
*
8RDV|1|iN|U|1280
8RDV|1|iN|A|1281
8RDV|1|iN|C|1282
*
8RDV|1|iN|G|1382
8RDV|1|iN|G|1383
8RDV|1|iN|A|1384
8RDV|1|iN|A|1385

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain V

Heterogenous tRNA