J3_8RDV_025
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_025 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.1032
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|Z2|G|1408
8RDV|1|Z2|G|1409
8RDV|1|Z2|G|1410
8RDV|1|Z2|A|1411
8RDV|1|Z2|C|1412
8RDV|1|Z2|G|1413
*
8RDV|1|Z2|C|1552
8RDV|1|Z2|C|1553
*
8RDV|1|Z2|G|1556
8RDV|1|Z2|A|1557
8RDV|1|Z2|A|1558
8RDV|1|Z2|A|1559
8RDV|1|Z2|A|1560
8RDV|1|Z2|G|1561
8RDV|1|Z2|C|1562
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
Coloring options: