J3_8RDV_029

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8RDV|1|iN|U|95, 8RDV|1|iN|A|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RDV_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0594

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RDV|1|iN|G|93
8RDV|1|iN|C|94
8RDV|1|iN|U|95
8RDV|1|iN|U|96
8RDV|1|iN|A|97
8RDV|1|iN|A|98
8RDV|1|iN|C|99
*
8RDV|1|iN|G|402
8RDV|1|iN|G|403
8RDV|1|iN|G|404
8RDV|1|iN|G|405
8RDV|1|iN|A|406
8RDV|1|iN|A|407
8RDV|1|iN|U|408
8RDV|1|iN|A|409
8RDV|1|iN|U|410
*
8RDV|1|iN|A|436
8RDV|1|iN|G|437
8RDV|1|iN|C|438

Current chains

Chain iN

16S rRNA

Nearby chains

Chain H

Elongation factor Tu

Chain L6

Small ribosomal subunit protein uS12

Chain Pj

Small ribosomal subunit protein bS16