J3_8RDV_031
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGG*CUAGA*UGACA
- Length
- 13 nucleotides
- Bulged bases
- 8RDV|1|iN|A|697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDV_031 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.109
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RDV|1|iN|U|629
8RDV|1|iN|G|630
8RDV|1|iN|G|631
*
8RDV|1|iN|C|695
8RDV|1|iN|U|696
8RDV|1|iN|A|697
8RDV|1|iN|G|698
8RDV|1|iN|A|699
*
8RDV|1|iN|U|795
8RDV|1|iN|G|796
8RDV|1|iN|A|797
8RDV|1|iN|C|798
8RDV|1|iN|A|799
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain BQ
- Small ribosomal subunit protein uS8
- Chain L6
- Small ribosomal subunit protein uS12
- Chain OL
- Small ribosomal subunit protein uS15
- Chain QZ
- Small ribosomal subunit protein uS17
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