3D structure

PDB id
8RDV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
8RDV|1|iN|C|1259
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RDV_033 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1418
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28881.1
Basepair signature
cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
Number of instances in this motif group
2

Unit IDs

8RDV|1|iN|C|1034
8RDV|1|iN|U|1035
8RDV|1|iN|U|1036
8RDV|1|iN|G|1037
8RDV|1|iN|A|1038
8RDV|1|iN|C|1039
8RDV|1|iN|A|1040
8RDV|1|iN|U|1041
*
8RDV|1|iN|A|1088
8RDV|1|iN|C|1089
8RDV|1|iN|A|1090
8RDV|1|iN|G|1091
*
8RDV|1|iN|C|1255
8RDV|1|iN|U|1256
8RDV|1|iN|U|1257
8RDV|1|iN|A|1258
8RDV|1|iN|C|1259
8RDV|1|iN|G|1260

Current chains

Chain iN
16S rRNA

Nearby chains

Chain B
Methyl-accepting chemotaxis protein
Chain HK
Small ribosomal subunit protein uS14

Coloring options:


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