J3_8RJC_003
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8RJC|1|K|A|1534, 8RJC|1|K|G|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJC_003 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.064
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RJC|1|K|U|1531
8RJC|1|K|G|1532
8RJC|1|K|A|1533
8RJC|1|K|A|1534
8RJC|1|K|C|1535
8RJC|1|K|U|1536
8RJC|1|K|A|1537
*
8RJC|1|K|U|1622
8RJC|1|K|A|1623
8RJC|1|K|G|1624
*
8RJC|1|K|C|1640
8RJC|1|K|G|1641
8RJC|1|K|A|1642
8RJC|1|K|A|1643
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
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