J3_8RJC_011
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8RJC|1|K|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJC_011 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0923
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RJC|1|K|C|4241
8RJC|1|K|U|4242
8RJC|1|K|C|4243
*
8RJC|1|K|G|4267
8RJC|1|K|A|4268
8RJC|1|K|G|4269
*
8RJC|1|K|C|4278
8RJC|1|K|A|4279
8RJC|1|K|A|4280
8RJC|1|K|A|4281
8RJC|1|K|A|4282
8RJC|1|K|G|4283
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
- Chain T
- 60S ribosomal protein L21
- Chain o
- 60S ribosomal protein L36a-like
- Chain q
- Transfer RNA; tRNA
- Chain u
- 5S ribosomal RNA; 5S rRNA
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