J3_8RJC_012
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8RJC|1|K|A|4464, 8RJC|1|K|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJC_012 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0897
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RJC|1|K|U|4463
8RJC|1|K|A|4464
8RJC|1|K|U|4465
8RJC|1|K|C|4466
*
8RJC|1|K|G|4491
8RJC|1|K|U|4492
8RJC|1|K|U|4493
*
8RJC|1|K|A|4507
8RJC|1|K|C|4508
8RJC|1|K|U|4509
8RJC|1|K|A|4510
8RJC|1|K|A|4511
8RJC|1|K|U|4512
8RJC|1|K|A|4513
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain O
- 60S ribosomal protein L13
- Chain V
- Ribosomal protein L23
- Chain w
- Ribosomal protein L3
Coloring options: