3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
8RJC|1|K|A|4464, 8RJC|1|K|U|4465
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RJC_012 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0897
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

8RJC|1|K|U|4463
8RJC|1|K|A|4464
8RJC|1|K|U|4465
8RJC|1|K|C|4466
*
8RJC|1|K|G|4491
8RJC|1|K|U|4492
8RJC|1|K|U|4493
*
8RJC|1|K|A|4507
8RJC|1|K|C|4508
8RJC|1|K|U|4509
8RJC|1|K|A|4510
8RJC|1|K|A|4511
8RJC|1|K|U|4512
8RJC|1|K|A|4513

Current chains

Chain K
28S rRNA

Nearby chains

Chain O
60S ribosomal protein L13
Chain V
Ribosomal protein L23
Chain w
Ribosomal protein L3

Coloring options:


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