J3_8RJC_027
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8RJC|1|u|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJC_027 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0843
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RJC|1|u|C|9
8RJC|1|u|C|10
8RJC|1|u|A|11
8RJC|1|u|U|12
8RJC|1|u|A|13
8RJC|1|u|C|14
*
8RJC|1|u|G|65
8RJC|1|u|G|66
*
8RJC|1|u|U|109
8RJC|1|u|G|110
Current chains
- Chain u
- 5S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain I
- 60S ribosomal protein L10
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain T
- 60S ribosomal protein L21
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