J3_8RXH_005
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GAAG*UCAUCAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8RXH|1|L2|U|23, 8RXH|1|L2|C|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_005 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1294
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RXH|1|L1|G|1593
8RXH|1|L1|A|1594
8RXH|1|L1|A|1595
8RXH|1|L1|G|1596
*
8RXH|1|L2|U|20
8RXH|1|L2|C|21
8RXH|1|L2|A|22
8RXH|1|L2|U|23
8RXH|1|L2|C|24
8RXH|1|L2|A|25
8RXH|1|L2|C|26
*
8RXH|1|L2|G|35
8RXH|1|L2|U|36
8RXH|1|L2|C|37
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lh
- Putative 60S ribosomal protein L34
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Putative 60S ribosomal protein L39
Coloring options: