J3_8RXH_011
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CCAU*GCACG*CUUUGAG
- Length
- 16 nucleotides
- Bulged bases
- 8RXH|1|S1|U|1443, 8RXH|1|S1|A|1445
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_011 not in the Motif Atlas
- Geometric match to J3_4LFB_001
- Geometric discrepancy: 0.3697
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|S1|C|1284
8RXH|1|S1|C|1285
8RXH|1|S1|A|1286
8RXH|1|S1|U|1287
*
8RXH|1|S1|G|1416
8RXH|1|S1|C|1430
8RXH|1|S1|A|1431
8RXH|1|S1|C|1432
8RXH|1|S1|G|1433
*
8RXH|1|S1|C|1440
8RXH|1|S1|U|1441
8RXH|1|S1|U|1442
8RXH|1|S1|U|1443
8RXH|1|S1|G|1444
8RXH|1|S1|A|1445
8RXH|1|S1|G|1446
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SB
- 40S ribosomal protein SA
- Chain SJ
- Putative 40S ribosomal protein S15A
- Chain ST
- Putative 40S ribosomal protein S13
- Chain SY
- Putative 40S ribosomal protein S21
- Chain Sb
- 40S ribosomal protein S26
- Chain Sc
- Putative 40S ribosomal protein S27-1
Coloring options: