J3_8RXH_032
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AC*GAUAAGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8RXH|1|L7|U|60, 8RXH|1|L7|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_032 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.081
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8RXH|1|L7|A|44
8RXH|1|L7|C|45
*
8RXH|1|L7|G|58
8RXH|1|L7|A|59
8RXH|1|L7|U|60
8RXH|1|L7|A|61
8RXH|1|L7|A|62
8RXH|1|L7|G|63
8RXH|1|L7|U|64
*
8RXH|1|L7|A|95
8RXH|1|L7|A|96
8RXH|1|L7|U|97
8RXH|1|L7|C|98
8RXH|1|L7|U|99
Current chains
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LV
- Putative 60S ribosomal protein L23a
- Chain La
- Putative 60S ribosomal protein L35
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Putative 60S ribosomal protein L39
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