J3_8RXH_039
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AC*GAACUACAG*CA(PSU)
- Length
- 14 nucleotides
- Bulged bases
- 8RXH|1|S1|C|1181
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_039 not in the Motif Atlas
- Geometric match to J3_4LFB_012
- Geometric discrepancy: 0.3665
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|S1|A|1130
8RXH|1|S1|C|1131
*
8RXH|1|S1|G|1175
8RXH|1|S1|A|1176
8RXH|1|S1|A|1177
8RXH|1|S1|C|1178
8RXH|1|S1|U|1179
8RXH|1|S1|A|1180
8RXH|1|S1|C|1181
8RXH|1|S1|A|1182
8RXH|1|S1|G|1183
*
8RXH|1|S1|C|1190
8RXH|1|S1|A|1191
8RXH|1|S1|PSU|1192
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain LA
- Putative 60S ribosomal protein L2
- Chain Lo
- 60S ribosomal protein L37a
- Chain SA
- 40S ribosomal protein S3a
- Chain SO
- 40S ribosomal protein S14
- Chain ST
- Putative 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S26
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