J3_8T5H_005

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5H_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0927

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8T5H|1|B|C|1298
8T5H|1|B|G|1299
8T5H|1|B|G|1300
8T5H|1|B|A|1301
8T5H|1|B|A|1302
8T5H|1|B|G|1303
*
8T5H|1|B|C|1625
8T5H|1|B|A|1626
8T5H|1|B|G|1627
*
8T5H|1|B|C|1639
8T5H|1|B|A|1640
8T5H|1|B|A|1641
8T5H|1|B|G|1642

Current chains

Chain B

23S

Nearby chains