J3_8T5H_030
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8T5H|1|v|C|48, 8T5H|1|v|A|50, 8T5H|1|v|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T5H_030 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0929
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T5H|1|v|G|46
8T5H|1|v|C|47
8T5H|1|v|C|48
8T5H|1|v|U|49
8T5H|1|v|A|50
8T5H|1|v|A|51
8T5H|1|v|C|52
*
8T5H|1|v|G|359
8T5H|1|v|G|360
8T5H|1|v|G|361
8T5H|1|v|G|362
8T5H|1|v|A|363
8T5H|1|v|A|364
8T5H|1|v|U|365
8T5H|1|v|A|366
8T5H|1|v|U|367
*
8T5H|1|v|A|393
8T5H|1|v|G|394
8T5H|1|v|C|395
Current chains
- Chain v
- 16S
Nearby chains
- Chain k
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S16
Coloring options: