J3_8T5H_032
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 8T5H|1|v|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T5H_032 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.1315
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T5H|1|v|C|586
8T5H|1|v|G|587
8T5H|1|v|G|588
*
8T5H|1|v|C|651
8T5H|1|v|U|652
8T5H|1|v|U|653
8T5H|1|v|G|654
8T5H|1|v|A|655
*
8T5H|1|v|U|751
8T5H|1|v|G|752
8T5H|1|v|A|753
8T5H|1|v|C|754
8T5H|1|v|G|755
Current chains
- Chain v
- 16S
Nearby chains
- Chain g
- 30S ribosomal protein S8
- Chain k
- 30S ribosomal protein S12
- Chain n
- 30S ribosomal protein S15
- Chain p
- 30S ribosomal protein S17
Coloring options: