J3_8UPO_021

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8UPO|1|D|C|48, 8UPO|1|D|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPO_021 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0703

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UPO|1|D|G|46
8UPO|1|D|C|47
8UPO|1|D|C|48
8UPO|1|D|U|49
8UPO|1|D|A|50
8UPO|1|D|A|51
8UPO|1|D|C|52
*
8UPO|1|D|G|359
8UPO|1|D|G|360
8UPO|1|D|G|361
8UPO|1|D|G|362
8UPO|1|D|A|363
8UPO|1|D|A|364
8UPO|1|D|U|365
8UPO|1|D|A|366
8UPO|1|D|U|367
*
8UPO|1|D|A|393
8UPO|1|D|G|394
8UPO|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16