J3_8UPO_035

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPO_035 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0675

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8UPO|1|a|G|1424
8UPO|1|a|G|1425
8UPO|1|a|G|1426
8UPO|1|a|A|1427
8UPO|1|a|C|1428
8UPO|1|a|G|1429
*
8UPO|1|a|C|1564
8UPO|1|a|C|1565
*
8UPO|1|a|G|1568
8UPO|1|a|A|1569
8UPO|1|a|A|1570
8UPO|1|a|A|1571
8UPO|1|a|A|1572
8UPO|1|a|G|1573
8UPO|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2