J3_8UPR_001

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UPR|1|D|U|871, 8UPR|1|D|A|873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPR_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0693

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8UPR|1|D|C|826
8UPR|1|D|U|827
8UPR|1|D|U|828
8UPR|1|D|G|829
*
8UPR|1|D|C|857
8UPR|1|D|G|858
8UPR|1|D|G|859
8UPR|1|D|A|860
8UPR|1|D|G|861
*
8UPR|1|D|C|868
8UPR|1|D|G|869
8UPR|1|D|U|870
8UPR|1|D|U|871
8UPR|1|D|A|872
8UPR|1|D|A|873
8UPR|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8