J3_8UPR_023
3D structure
- PDB id
- 8UPR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 8UPR|1|D|U|653
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UPR_023 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.0892
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UPR|1|D|C|586
8UPR|1|D|G|587
8UPR|1|D|G|588
*
8UPR|1|D|C|651
8UPR|1|D|U|652
8UPR|1|D|U|653
8UPR|1|D|G|654
8UPR|1|D|A|655
*
8UPR|1|D|U|751
8UPR|1|D|G|752
8UPR|1|D|A|753
8UPR|1|D|C|754
8UPR|1|D|G|755
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S8
- Chain R
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
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